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NM_025114:p.Leu906Trp

CEP290
NM_025114:c.2717T>G

Information

Variant Locale EXON25
PubMed ID (no data)
dbSNP ID rs7970228

Call

Variation chr12:88500552:A>C
Pathogenicity Benign
Phenotype

Interpretation

In Silico Computational

SIFT Polyphen-2 LRT MutationTaster PhyloP GERP++
Damaging Possibly Damaging Deleterious Polymorphism (Automatic) Conserved Conserved
0.02 0.947 0.000787 1 1.061 4.76

Variant Frequencies

OtoSCOPE™

(No data)
Alternate Allele Count
Exome Variant Server

5/8134
European American Alternate Allele Count

452/3634
African American Alternate Allele Count
1000 Genomes
European

(No data)
Utah residents, Northern and Western European ancestry

(No data)
Toscani in Italia

(No data)
British from England and Scotland

(No data)
Finnish from Finland

(No data)
Iberian populations in Spain
 
East Asian

(No data)
Han Chinese in Beijing, China

(No data)
Japanese in Toyko, Japan

(No data)
Han Chinese South

(No data)
Chinese Dai in Xishuangbanna

(No data)
Iberian populations in Spain

(No data)
Kinh in Ho Chi Minh City, Vietnam
West African

30/132
Yoruba in Ibadan, Nigeria

8/48
Luhya in Webuye, Kenya
 
Americas

20/98
African Ancestry in Southwest US

17/86
African Caribbean in Barbados

1/116
Mexican Ancestry in Los Angeles, CA

5/104
Puerto Rican in Puerto Rico

2/78
Colombian in Medellin, Colombia

(No data)
Peruvian in Lima, Peru
South Asian

2/136
Gujarati Indian in Houston, TX
 
 

Published Data

Manual curation in progress. Record generated from: ESP6500, 1000 Genomes, dbNSFP 2. Additional info from dbNSFP 2 -- More dbSNP IDs: rs7970228 | Gene full name: centrosomal protein 290kDa | Function description: Part of the tectonic-like complex which is required for tissue-specific ciliogenesis and may regulate ciliary membrane composition (By similarity). Activates ATF4-mediated transcription. Required for the correct localization of ciliary and phototransduction proteins in retinal photoreceptor cells; may play a role in ciliary transport processes. | Disease description: Defects in CEP290 are the cause of Bardet-Biedl syndrome type 14 (BBS14) [MIM:209900]. A syndrome characterized by usually severe pigmentary retinopathy, early-onset obesity, polydactyly, hypogenitalism, renal malformation and mental retardation. Secondary features include diabetes mellitus, hypertension and congenital heart disease. Inheritance is autosomal recessive, but three mutated alleles (two at one locus, and a third at a second locus) may be required for disease manifestation in some cases (triallelic inheritance).

http://vvd.eng.uiowa.edu/variant/1198
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